Module 2 The Flow of Genetic Information in the Cell
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What are the Three main steps in the flow of genetic information also known as ____
Central Dogma of Biology Replication (DNA - DNA) Transcription (DNA encodes RNA) Translation (RNA encodes proteinsProtein)
____ The process by which a cell makes an identical copy of its genome before it divides. The _____ in the DNA carries the genetic code
DNA Replication Sequence bases
Instructions for making proteins with the correct sequence of ____ are encoded in DNA DNA is found in chromosomes and in eukaryotic cells, chromosomes always remain in the ______ Proteins are made at ____ in the ____ or on the ____.
Amino acids Nucleus Ribosomes Cytoplasm Rough Endoplasmic Reticulum (RER)
____ carries the info from DNA in the nucleus during (____) to a ____ in the ____ that the helps assemple the protein during (_____)
RNA Transcription Ribosome Cytoplasm Translation
When copying DNA to RNA, ____ is added to the mRNA strand for every nucleotide in the DNA When translating to protein, ____ corresponds to ____ in the polypeptide sequence. Ultimately, this means that translation to protein is still systematic and colinear
one nucleotide three mRNA nucleotide one amino acid
DNA REPLICATION/SYNTHESIS: Each strand of existing DNA act as a template for ____. Overview of DNA Replication: a) ______ Each base is paired by hydrogen bonding with its specific partner, A - T and G - C b) _____ c) _____ Determines the order of nucleotides along a new, complemetary stransd d) ______ to form the sugar phosphate backbones of the new strand. Each “___” DNA molecule consists of one parental strand
Replication a) Two complementary strands of DNA for parent molecule b) Separation of the two DNA strands c) Each strand becomes a template d) Nucleotides are connected
Types of RNA produced in cells: Encodes proteins Acts as an adaptior between ___ and ____ Forms the Ribosome Functions in various nuclear processes (splicing) Facilitates chemical modification of RNAs Regulates gene expression Silences gene expression Also Regulates Gene Expression
mRNA tRNA mRNA & Amino Acids rRNA snRNA snoRNA miRNA siRNA IncRNA
____ Contains genetic instructions that allow organisms to grow and function. Includes these nitrogenous bases(4) ____ Executes the insructions and synthesizes proteins. Includes the same nitrogenous base except: _____ because it has ____
DNA Adenine Cytosine Guanine Thymine RNA Thymine Uracil
DNA Helix: Location: Sugar: Main type(s):
DNA Helix: Double-stranded Location: Nucleus Sugar: Deoxyribose Main type(s): B-form DNA
RNA Helix: Location: Sugar: Main type(s):
RNA Helix: Single-stranded Location: Nucleus & Cytoplasm Sugar: Ribose Main type(s): mRNA, rRNA, tRNA
KEY CONCEPTS: _____ catalyze changes in supercoiled state of DNA DNA replication has three distinct phases (___, ____, and ____) the last one is different at ____ of eukaryotic chromosomes DNA replication is very accurate since it allows _____ mistakes/base
Topoisomerase Initiation, Elongation, Termination Telomeres 1 x 10 ^-8 mistakes / base
3 Proposed Models of Replication: Our DNA actually is ______ which means that each strand of the double helix parent DNA serve as a template to male two new daughter strands
Semiconservative Model Conservative Model Dispersive Model ___________________ Semiconservative
Experiment used to confirm which model is the right one ____ Bacteria cultured in medium containing ____ (___) Bacteria transferred to medium containing ____(___) Centrifuge DNA sample after ____ min
Meelson and Stahl Experiment Heavy nitrogen (15 N) Light nitrogen (14 N) 40 min
_____ Complementary strand runs in opposite direction Bonding in DNA is through: ____ for bases ____ for backbone
Anti-parallel strands Hydrogen bonds - bases Covalent phosphodiester bonds - backbone
_____ replicates its DNA at a rate of 1000 nucleotides per second with less than one error in a billion nucleotides ____ replication proceeds at a rate ranging from 500 to 5000 nucleotides per minute at each replication fork (100 per nucleotides per second)
E. coli Eukaryotic
Three general features of chromosomal replication (3)
DNA Replication is semiconservative DNA Replication is Bidirectional DNA Replication begins at Specific Chromosomal Sites
Replication begins at an ____ then the double helix unwings in opposite directions, replicating DNA both ways away from two replication forks DNA synthesis is initiated at special regions called ____
Origin of Replication Replication origins
Summary of DNA Replication 1 _____ unwind the parental double helix 2 _____ stabilize the unwound parental DNA 3 ____ is synthesized continuously in the 5’ - 3’ direction by ____ 4 _____ is synthesized discontinuously. _____ synthesizes a short ____ which is extended by a ____ to form an ____ 5 After the ____ is replaced by DNA, ____ joins the ____ to the growing strand
1 Helicase unwind the parental double helix 2 Single-strand binding proteins stabilize the unwound parental DNA 3 The leading strand is synthesized continuously in the 5’ - 3’ direction by DNA polymerase 4 The Lagging Strand is synthesized discontinuosly. Primase synthesizes a short RNA primer which is extended by a DNA polymerase to form an okazaki fragment 5 After the RNA primer is replaced by DNA, DNA ligase joins the okazaki fragments
DNA Replication: Enzymes involved (10) ____(DNApol clamp loader) ____ unwinds ____ stabilizes ____ supercoiling , chromosomal DNA in bacteria. Prevents tangling upstream (____) DNA polymerase I - DNA polymerase II- DNA polymerase III - _____ creates RNA primers _____ binds okazaki fragments “spot welder”
Initiator proteins Helicase Single-strand binding proteins topoisomerase I & II (DNA gyrase) ________________ repairs, removes RNA primers and replaces DNA nucleotides cleans up okazaki fragments Main or primary polymerase, builds new DNA to existing strands of DNA ________________ DNA primase DNA ligase
Enzymes do make mistakes at a rate of about 1 per every ____ nucleotides considering 6 billion base pairs in each diploid cell, it would be ____ mistakes every time a cell divides
1 per every 100 000 nucleotides 120 000 mistakes every division
Modes of Replication: Individual units of replication are called _____ reach contains a ____ TEMPLATE: BREAKAGE: REPLICONS: DIRECTION: PRODUCTS: 1) _____ Common type of replication that occurs in circular DNA (E coli) TEMPLATE: BREAKAGE: REPLICONS: DIRECTION: PRODUCTS: 2)_____ Takes place in some viruses and ecoli F factor TEMPLATE: BREAKAGE: REPLICONS: DIRECTION: PRODUCTS: 3)____ Replication takes place simultaneously from thousands of origins TEMPLATE: BREAKAGE: REPLICONS: DIRECTION: PRODUCTS:
Replicons Replication origin Theta replication TEMPLATE: circular BREAKAGE: no REPLICONS: 1 DIRECTION: both PRODUCTS: two circular molecules Rolling-cycle replication TEMPLATE: circular BREAKAGE: yes REPLICONS: 1 DIRECTION: Unidirectional PRODUCTS: 1 circular, 1 linear Linear-eukaryotic replication TEMPLATE: linear BREAKAGE: no REPLICONS: many DIRECTION: bidirectional PRODUCTS: 2 linear molecules