Chemical foundation
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proton mass
1.67*10^(-24) g
90% of organism’s weight is made up from
O, C, H, N
macromolecules
cellular structures such as ribosomes, chromosomes, flagella, and cell walls are made up of ordered arrays of linear polymers proteins, nucleic acids, polysaccharides such as starch, glycogen, and cellulose, Lipids
5 levels of polymerization
• organic molecules: CO2, NH3, PO4 ions • monomers -> biological macromolecules • supramolecular structures • organellas • cell
three major kinds of macromolecular polymers
proteins, nucleic acids, and polysaccharides.
principles that underlie the polymerization processes
• Macromolecules are always synthesized by the stepwise polymerization of similar or identical small molecules called monomers. • The addition of each monomer occurs with the re-moval of a water molecule and is therefore termed a condensation reaction. • The monomeric units that are to be joined together must be present as activated monomers before condensa-tion can occur. • Activation usually involves coupling of the monomer to a carrier molecule, forming an activated monomer. • The energy needed to couple the monomer to the carrier molecule is provided by a molecule called adenosine triphosphate (ATP) or a related high-energy compound. • Because of the way they are synthesized, macromolecules have an inherent directionality. This means that the two ends of the polymer chain are chemically differ-ent from each other.
hydrolysis
breaking down of molecules
dehydration synthesis
synthesis of macromolecules
3 characteristics of covalent bonds
bond angles bond lengths bond energies (strengths)
bond strength
amount of energy that must be supplied to break that bond (kcal/mole)
kilocalorie
the amount of energy needed to raise the temperature of water by one degree C
non-polar covalent bonds
hydrocarbons - stable C-H compounds do not form hydrogen bonds generally insoluble methane, methyl group
3 functional groups
carboxyl and phosphate groups - negatively charged amino groups - positively charged hydroxyl, sulfhydryl, carbonyl, aldehyde - neutral but polar groups
hydrogen bond
electropositive H is partially shared by 2 electronegative atoms
hydrophobic forces
the attraction between water-hating molecules (and surfaces) that draws them together, causing aggregation, phase separation, protein folding
polarity of water (3 characteristics)
cohesiveness temperature-stabilizing capacity (boiling point, specific heat, heat of vaporization) solvent